In Transformers: Autobots, Optimus Prime meets up with the other Autobots to give further commands to his troops. Create-A-Bot, the new rookie, is eager to help in the cause, but Optimus tells him to sit back while the other Autobots fight the Decepticons. Create-A-Bot finally defies orders and completes a mission against Optimus's council. After nearly getting himself and the other Autobots killed, Create-A-Bot apologizes to Optimus personally. Taking pity on the newcomer, Optimus lets him off with a stern warning, and they move out together to face Megatron, who has absorbed the power of the Allspark. Optimus fights Megatron, but Megatron gains the upper-hand. Optimus is on the verge of defeat when Create-A-Bot takes the Allspark and drives to Megatron's chest, weakening Megatron but mortally wounding himself in the process. Optimus fights Megatron again, defeating him. As Megatron is on the ground, he tells Optimus that if he kills him, the Allspark will be destroyed and Cybertron will never be restored. Optimus says to Megatron that he will do what he must do, then he raises his sword and kills Megatron, destroying the Allspark in the process. Create-A-Bot also dies, but not before telling Optimus his final request to make Earth the new home of the Autobots and to protect the humans. The game ends with Optimus sending a message to all surviving Autobots taking refuge among the stars.
The Hot Rod from the future animated movie continuity would also appear. Target: 2006 had Hot Rod, Kup and Blurr timejump from 2006 (specifically partway through the Transformers movie) to 1986 to thwart Galvatron's scheme, under the influence of Unicron; later post-movie stories revealed that Firebolt had died on Earth years before 2007, and Space Pirates had Rodimus Prime briefly reverting to Hot Rod during the Quintesson attack on Autobot City. This Hot Rod also appeared in several of the "Aspects of Evil" stories. Told from the flashbacks of an aged Rodimus Prime, these had Hot Rod come up against some of the greatest Decepticon villains. He accepted the surrender of Scorponok - only to wind up defending him and a human town against the Micromaster Air Strike Patrol: defending Autobot City from a full-scale attack by Shockwave: and being captured and used as a pawn by Megatron to flush out an Autobot spy in his ranks. (Marvel UK #223-227)
With the major threats taken care of, Optimus Prime turned his and the Autobots' attention to identifying and shutting down the rogue projects taking place across Earth using stolen Binaltech technology and secrets. It was during one of these missions that Optimus Prime faced off against Nemesis Prime, both in Binaltech Dodge Ram forms. Initially, things looked bad for Optimus Prime, as he was no match for his opponent's spectral armor. However, the Protector merged with Prime, and the enormous power that resulted allowed Prime to reflect Nemesis Prime's final attack, obliterating the evil Decepticon. Optimus Prime recalls the union of the two sparks being familiar, from an event in the distant past. Optimus Prime is reassured by the Protector about "the seeds of the future" and the Protector is revealed to be Optimus Primal.
This mold was redecoed into Universe Optimus Primal and Beast Wars Telemocha Series DX Convoy, and retooled into Beast Wars Reborn/Beast Wars Tenth Anniversary versus pack Optimus Primal. Takara also created multiple special variants, including all-gold (from Tele-V Magazine, only ten awarded), red and gray (Tele-V again, but only one awarded), and blue-fur (a Comics Bom Bom design-contest prize, only five awarded).
Optimus later led a convoy in search for a building site for Autobot City, which ran into a Decepticon ambush. Rodimus Prime remembers the Transformers greatest battle on Earth. He sent off several Autobots to get help, knowing this was the only chance of victory. Transformers Combat Data Those several Autobots were seen again, but Prime... wasn't.
In 2007, following the release of the Matrix's energy, Prime began to suffer from visions which foretold a great transformation for Cybertron. Events began with the Decepticons' theft of the key to the Plasma Energy Chamber, which forced Prime to consult Alpha Trion within Vector Sigma. Prime learned that the mega-computer had orchestrated events in order to restore Cybertron's Golden Age. When the Plasma Energy Chamber was opened and threatened to drive Earth's Sun supernova, Spike Witwicky and the Nebulans, who had become involved in the conflict as a result of these events, were able to drain off the excess solar energy and revitalize Cybertron. With the Decepticons driven off Cybertron and Nebulon free from tyranny, Cybertron enters into a Golden Age of peace and prosperity under the leadership of Optimus Prime and the Autobots.
In the aftermath, Victorion believed trying to find the Requiem Blaster was a fool's errand, and that they should have been preparing Optimus Prime's funeral instead. The Swamp Megatron often thought of Optimus, noting the similarities between him and Optimus Primal Primal and wondering what his old rival would think of his heroic exploits. Consequences Ultimately, thanks to his connection to the Matrix and the Primes, Optimus's spark was freed from the Well and revived after Megatronus's defeat, to the joy of his companions. Mourning the sacrifice of Megatron, whom he considered a brother, he commended Optimal Optimus for being a fine choice as the new Matrix-bearer, and began teaching him the ways of Cybertron, promising to support him in his new leadership role. Saga's End
Kabaya's second candy toy of Energon Optimus Prime was released as part of the Hyper Transformers series. This non-transforming figurine depicts Prime in his lesser-seen combined mode with Wing Saber: "Fight Mode", as Hasbro called it, or "Cannon Mode" in Japan. The figure's shoulder cannons came on a separate sprue in-package and had to be removed by the buyer. Prime's head can be removed and attached to the Hyper Transformers Omega Supreme figure, creating Optimus Supreme. As a candy toy, Prime came with a stick of gum.
If Optimus ordered his troops to come to the humans’ aid, they found themselves taking part in a struggle in futility, as the entire town was near-weightless, meaning they couldn’t put the humans anywhere where they wouldn’t float away once more. Then, the Autobots heard Decepticons approaching. Helpless in their current position, the Autobots were quickly eradicated by the Decepticons.